About   Help   FAQ
rs6241372 SNP Detail
Summary
  • ID
    rs6241372
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr14:105208861 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TAAGCACAAG AAGGACAAAG
    GAAGTGTTGA GAAGATAGGA CTGTGGCAGG ACACTCGCCC GCCATGTGCA ACCCTGATTC
    GGTGCCATAA AGGAACAGAG AAGGAAGGGC AGGGTGGATG TAAAGGGAGA GAATGGTCTT
    TCTAGAAACC TTAAAAGTCC CATCTTCTAC TGCCTAAAAA GATCAGGCTG CAAACACATC
    R
    GCCTGCTGAT AGAGAACCAT TGCCAGTGTA GCTGCTCTGT CACATACGTT TCAAGAGGTG
    GCAGAGAGAA GGGAGACTCT GTCTATTCTC AATGTTCTGA CCTATGAACA TTTGAATGAT
    TAGTAGCCTA ACATTCCTTG TAAAAAGCCA ATCTGAGACA TCCTACAAGT CCCAGTGGCT
    TGCAGGACAG GAGCAAGCCA                                            
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
C57BL/6J
CAST/EiJ
CZECHII/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss8647123 WI_WGS_14_96154693 WI MOUSE f SNP A G
ss49359973 NES12571714 PERLEGEN MM_PANEL2 f SNP A A A A A G A A G G A A A
SNP Consensus Information
SNP Consensus Type
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
C57BL/6J
CAST/EiJ
CZECHII/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs6241372 SNP A A A A A A G G A A G G A A A
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss49359973 NES12571714 PERLEGEN MM_PANEL f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr14:105208861 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Gm24280 predicted gene, 24280 2 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support.
last database update
03/18/2025
MGI 6.24
The Jackson Laboratory