rs6241088 SNP Detail

Summary

• ID
  rs6241088
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:30197988 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGAAGTTCT AGGGTCCAGC
  TGCCCACTTT CATTTAAAAA ATGAGAAGTC TTTTGAAACC ACAAATGCAG ACAACACAGC
  ATTAGAGAAA GGATGGACAG GCAGTGAGAT CGCCATCAAG GGTAGAGATT TTCTTCTTGT
  TCCCTGCTTC TTAGAAATGG CTACGTTGGT TGTAAACTCT GGAAGCTGGT GGGCAGCTTA
  R
  ATGTGTACCC TCCTTGAAAA CAAGACGTGT GAAGACAGTT CCTAACTTGA AGAAGAGATG
  GAAACTTCTG AGAGGCAAGA GAAATGATGG GGGATGAGAG TCCACTCTGC TCGGTTGAGT
  TCTAACTTAG CTGTTCCACG TGGAAGCCCC TTGTCAGACA TATCTTAATT TATAGCAGAA
  ACAAAGGGAA GGGACTGTGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8646838	WI_WGS_3_29956784	WI	MOUSE	f	SNP							A		G
ss49570928	NES12879231	PERLEGEN	MM_PANEL2	f	SNP		A	A	A	A	A		G		A	A		A	A	G	A
ss134729367	ENSMUSSNP4914882	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A								A		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6241088					SNP	A	A	A	A	A	A	A	G	G	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49570928	NES12879231	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:30197988 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Mecom	MDS1 and EVI1 complex locus			Intron
				Noncoding-Transcript-Variant
Rr574726	regulatory region 574726			125 bp proximal