rs6241036 SNP Detail

Summary

• ID
  rs6241036
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:108514959 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         GGCAGGTGAT
  TCATTAAAAT ACTGGCGATA CCAAAGTTCT CACATTTAAG GATCTGTTAT TTCAGCACAG
  AGCTTAGATT CTGTNCCAGG AAGCTTGTCT TCTATGCATT AGNATTTTAA TGGGGTTCCT
  CCTANCCCAG TTTCACATTT TGAACTTACA GAGGCAGTGA AGGGGTCATA GCCCAGAAAG
  CCTCTTTCCT ACCTTTTCAT GGAAGAACTC CGAAGAAATA GAGAATGAAG GATTATCCCA
  R
  GGTTAGAACA CATGGCCTTT GATTGTTGTG GATGCTACTT GTTTGAAAGT TTGGTCCACA
  GCACTCTTTC AGTTTGCTAT GGTTTAAAGA TCCATTGTGT CTGTGGATGT TTATGGACTC
  CTTGAACATT GCCTTCATAT CCCAGAGTCA CAGGTACCCC TGTATAGAGC AGGGGGAAAA
  AACTAGAAAG AGTGAAGTTG AGTCAAGGAC TCTTGTGTGG AAGAAGTGTG TGTGTTTTAC
  ATGTGTTCAA                                                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8646786	WI_WGS_6_109377601	WI	MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6241036					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:108514959 () rs orientation: forward

Symbol	Name	Function Class
Itpr1	inositol 1,4,5-trisphosphate receptor 1	Intron
Rr636130	regulatory region 636130	586 bp distal
Rr636131	regulatory region 636131	237 bp proximal