rs6241034 SNP Detail

Summary

• ID
  rs6241034
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:30197961 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTATGCTAC AGAGAGAAAG
  AGGGGGGGGG AAGTTCTAGG GTCCAGCTGC CCACTTTCAT TTAAAAAATG AGAAGTCTTT
  TGAAACCACA AATGCAGACA ACACAGCATT AGAGAAAGGA TGGACAGGCA GTGAGATCGC
  CATCAAGGGT AGAGATTTTC TTCTTGTTCC CTGCTTCTTA GAAATGGCTA CGTTGGTTGT
  R
  AACTCTGGAA GCTGGTGGGC AGCTTAAATG TGTACCCTCC TTGAAAACAA GACGTGTGAA
  GACAGTTCCT AACTTGAAGA AGAGATGGAA ACTTCTGAGA GGCAAGAGAA ATGATGGGGG
  ATGAGAGTCC ACTCTGCTCG GTTGAGTTCT AACTTAGCTG TTCCACGTGG AAGCCCCTTG
  TCAGACATAT CTTAATTTAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8646784	WI_WGS_3_29956757	WI	MOUSE	f	SNP								A		G
ss49570929	NES12879229	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	A	A		A		A	A	A		A	A	G	A
ss134729364	ENSMUSSNP1192068	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A								A			G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6241034					SNP	A	A	A	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49570929	NES12879229	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:30197961 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Mecom	MDS1 and EVI1 complex locus			Intron
				Noncoding-Transcript-Variant
Rr574726	regulatory region 574726			152 bp proximal