rs6241000 SNP Detail

Summary

• ID
  rs6241000
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:30197936 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCAGAAAG ATCCACACAT
  GCTTATCTAT GCTACAGAGA GAAAGAGGGG GGGGGAAGTT CTAGGGTCCA GCTGCCCACT
  TTCATTTAAA AAATGAGAAG TCTTTTGAAA CCACAAATGC AGACAACACA GCATTAGAGA
  AAGGATGGAC AGGCAGTGAG ATCGCCATCA AGGGTAGAGA TTTTCTTCTT GTTCCCTGCT
  Y
  CTTAGAAATG GCTACGTTGG TTGTAAACTC TGGAAGCTGG TGGGCAGCTT AAATGTGTAC
  CCTCCTTGAA AACAAGACGT GTGAAGACAG TTCCTAACTT GAAGAAGAGA TGGAAACTTC
  TGAGAGGCAA GAGAAATGAT GGGGGATGAG AGTCCACTCT GCTCGGTTGA GTTCTAACTT
  AGCTGTTCCA CGTGGAAGCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss8646749	WI_WGS_3_29956732	WI	MOUSE	f	SNP							T		C
ss49570931	NES12879225	PERLEGEN	MM_PANEL2	f	SNP		T	T	T	T	T		C		T	T	T		T	T	C
ss134729358	ENSMUSSNP908356	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T								T			C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs6241000					SNP	T	T	T	T	T	T	T	C	C	T	T	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49570931	NES12879225	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:30197936 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Mecom	MDS1 and EVI1 complex locus			Intron
				Noncoding-Transcript-Variant
Rr574726	regulatory region 574726			177 bp proximal