rs6240766 SNP Detail

Summary

• ID
  rs6240766
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:170207376 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAATGGTTTC TTTGCAGCTC
  TCGCCCTGTG ACTTTAGTTT TCTTGTGCCT GTTTAAGTTC CTAGATATTG AAAGTCACGG
  GGACCCAAAG TTGTCTGTCC ACATTCTTTC CATTCCACAG AGATTAAGAG CTTGGCAAAT
  TCACCAAGGA AGCTATGTAG CCAGACACAT CCCCTGTAAG AATATCAGGC AGCATGGCTG
  Y
  GTTCCAATGA CCTAGGTCAT TCATATCTCA TATGTCACTT TAGGAATTCT TTGTGTCAGT
  CCACGGCTTT GGCCTTTTTT GTTTTGTGGA CTGAATTTTA CTGTGTAGCA CAGTGTAGCT
  TTGACATAGG AATCCACTCC AGGTTCTTAA GTGCTAGGAT TACAAGTGTA AGCTACTATG
  CCTGGCTATA AGTTACACTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss8646515	WI_WGS_2_171377021	WI	MOUSE	f	SNP							T		C
ss37818002	NES08714115	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T		C		T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs6240766					SNP	T	T	T	T	T	T	T	C	C	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37818002	NES08714115	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:170207376 () rs orientation: forward

Symbol	Name	Function Class
Bcas1	brain enriched myelin associated protein 1	Intron
Bcas1os2	brain enriched myelin associated protein 1, opposite strand 2	within coordinates
Rr571426	regulatory region 571426	within coordinates