rs6240315 SNP Detail

Summary

• ID
  rs6240315
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:69443161 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGTAA TCACAGGACA TGGACACAGG
  Y
  GACTTGTGAC AATCCGAGGT CTGTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	CZECHII/EiJ	LG/J	SM/J
ss8646062	WI_WGS_3_70143559	WI	MOUSE	f	SNP		T	C
ss135268756	ENSMUSSNP2807377	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
ss320793236	CHEV_3_69339750	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	CZECHII/EiJ	LG/J	SM/J
rs6240315					SNP	C	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:69443161 () rs orientation: forward

Symbol	Name	Function Class
Ppm1l	protein phosphatase 1 (formerly 2C)-like	Intron
Rr578198	regulatory region 578198	within coordinates