rs6240090 SNP Detail

Summary

• ID
  rs6240090
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:108514843 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGTTCTCACA TTTAAGGATC TGTTATTTCA GCACAGAGCT
  TAGATTCTGT CCCAGGAAGC TTGTCTTCTA TGCATTAGGA TTTTAATGGG GTTCCTCCTA
  Y
  CCCAGTTTCA CATTTTGAAC TTACAGAGGC AGTGAAGGGG TCATAGCCCA GAAAGCCTCT
  TTCCTACCTT TTCATGGAAG AACTCCGAAG AAATAGAGA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J
ss8645837	WI_WGS_6_109377485	WI	MOUSE	f	SNP			T	C
ss45954803	mCV23140630	ABI	CRAMUS_MOUSE	f	SNP	T	T	T		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J
rs6240090					SNP	T	T	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:108514843 () rs orientation: forward

Symbol	Name	Function Class
Itpr1	inositol 1,4,5-trisphosphate receptor 1	Intron
Rr636130	regulatory region 636130	470 bp distal
Rr636131	regulatory region 636131	353 bp proximal