rs6240014 SNP Detail

Summary

• ID
  rs6240014
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:108514793 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAGATTTGAC CTAACAGGCA GGTGATTCAT TAAAATACTG
  GCGATACCAA AGTTCTCACA TTTAAGGATC TGTTATTTCA GCACAGAGCT TAGATTCTGT
  Y
  CCAGGAAGCT TGTCTTCTAT GCATTAGGAT TTTAATGGGG TTCCTCCTAT CCCAGTTTCA
  CATTTTGAAC TTACAGAGGC AGTGAAGGGG TCATAGCCC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8645761	WI_WGS_6_109377435	WI	MOUSE	f	SNP								C		T
ss45982081	mCV23140620	ABI	CRAMUS_MOUSE	f	SNP		C	C					C			T
ss51812410	NES14767170	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C	C		T		T	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6240014					SNP	C	C	C	C	C	C	C	C	T	T	T	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51812410	NES14767170	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:108514793 () rs orientation: forward

Symbol	Name	Function Class
Itpr1	inositol 1,4,5-trisphosphate receptor 1	Intron
Rr636130	regulatory region 636130	420 bp distal
Rr636131	regulatory region 636131	403 bp proximal