rs6239991 SNP Detail

Summary

• ID
  rs6239991
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:30197781 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         TATATATGAC
  AAACCAGCCT GAAGTTCCAC ATGCCATACC CAAGACTGTG TTCCCTCCTC TCTGCAGACA
  CATTCAGCAT GACTGGAAGT TGTGTGAAAT GACCTGATGT TTCTAAAGTG CTTGGGAAGT
  GTATGGGACA AACTNTGAGC AACTGAAGTA TTTGTTCTCA GCATGAAGAT CAATATATTT
  AGTGAAAGAC ACAAACTTCA GAAAGATCCA CACATGCTTA TCTATGCTAC AGAGAGAAAG
  R
  GGGGGGGGGA AGTTCTAGGG TCCAGCTGCC CACTTTCATT TAAAAAATGA GAAGTCTTTT
  GAAACCACAA ATGCAGACAA CACAGCATTA GAGAAAGGAT GGACAGGCAG TGAGATCNCC
  ATCAAGGGTA GAGATTTTCT TCTTGTTCCC TGCTNCTTAG AAATGGCTNC GTTGGTTGTN
  AACTCTGGAA GCTGGTGGGC AGCTTANATG TGTACCCTCC TTGAAAACAA GACGTGTGAA
  GACAGTTCCT                                                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8645738	WI_WGS_3_29956577	WI	MOUSE	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6239991					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:30197781 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Mecom	MDS1 and EVI1 complex locus			Intron
				Noncoding-Transcript-Variant
Rr574726	regulatory region 574726			332 bp proximal