rs6239884 SNP Detail

Summary

• ID
  rs6239884
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:17627897 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCCCCGAT GTGTAAGGAT
  GTTGATCATT TGTTCACTTG CAAACACAAA GGCAATTTTT TGTTTTGTAT ATATTGTCTT
  TAGAAAAATG CACAGTCAAA TCTTGTACCT GTAATTTTTA ATTGTATAAA AATATATGTA
  ATACACAATT GACTAAAAAA AAATCAACAT TTTTACTACT GCATTACATA TCCATACATA
  Y
  AATATCTTTA TGTATTTTTA TAAAAAGAGG CTTGTATTAA TCCTTATAGA TAAAAACTCT
  TTCAAAACAA CAACCACAAA AATATACATT AGTGGAAACA TTAGGTGGGC AGGTCCCCAA
  AGTTAGGGGA GTCTCAGCTA TAGGCCTCTG GTGTTGTATA ACTACAGTCT TAGCCCTTTG
  ATTGATGGAA GCTAATGTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss8645631	WI_WGS_6_17496605	WI	MOUSE	f	SNP							C		T
ss47814282	NES11716642	PERLEGEN	MM_PANEL2	f	SNP			C	C	C	C		T		C	C	C	T	T	C	C
ss133019228	ENSMUSSNP6091240	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C								C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs6239884					SNP	T	C	C	C	C	C	C	T	T	C	C	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47814282	NES11716642	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:17627897 () rs orientation: forward

Symbol	Name	Function Class
Rr626820	regulatory region 626820	1151 bp proximal
Rr626821	regulatory region 626821	1911 bp proximal