rs6239605 SNP Detail

Summary

• ID
  rs6239605
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:96093825 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCTTTGTGT CCTGTCCTTT
  CGCCGCACCC CCTACCTCAA AGTCCTTGGT GGTACCCTCT GATGGTGAAG TCCAACGTTC
  CGGGGGACCA GTTGCACGCA CAAGTTCCCG CTCTTCGGTT CGTGGGTGCT GCCGCCCCTC
  CCTCCAGGCC CCTCTCCACA TCCTTCCCTG GCCTCCTGCC ATCCACAGGG CTTCTCCGTG
  Y
  GGCAGGTCCG CGGTCTGCAT GCTGTCTTTT GTGGCTCCGC AACCTTGACT GTGATTCCCC
  TGCTCTTGTT TTGGCCTTCT CCAGCCCCTC TCCCGGTGTC TTTTGCTGCC TCCCGGGGCT
  CAGCTTCCAG TCTGGGGCAG ACTGGATAGA AATGGGAGGG TGCATGCCAG CGCCCGCCTG
  CTGAGTCTGC AGCCCTTAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8645352	WI_WGS_6_96933629	WI	MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6239605					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:96093825 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
2900060L22Rik	RIKEN cDNA 2900060L22 gene			Noncoding-Transcript-Variant
Rr635053	regulatory region 635053			within coordinates
Rr635054	regulatory region 635054			453 bp distal
Rr635055	regulatory region 635055			131 bp distal
Rr635056	regulatory region 635056			111 bp proximal
Rr635057	regulatory region 635057			275 bp proximal
Tafa1	TAFA chemokine like family member 1			Intron
				Noncoding-Transcript-Variant
Tssr57828	transcription start site region 57828			1573 bp downstream
Tssr62190	transcription start site region 62190			926 bp upstream
Tssr62191	transcription start site region 62191			127 bp downstream