rs6239446 SNP Detail

Summary

• ID
  rs6239446
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:108514664 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGAG AGAAGAGTTT GGCTAGAATT
  R
  CTAATTAATT TTAACTACTT CGTAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J	LG/J	SM/J
ss8645190	WI_WGS_6_109377306	WI	MOUSE	f	SNP			A	G
ss45974669	mCV23140619	ABI	CRAMUS_MOUSE	f	SNP	G	G	A		G
ss133504466	ENSMUSSNP7144626	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G			G
ss321892965	CHEV_6_108487697	CHEVERUD	SCREENING_POP	f	SNP						G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J	LG/J	SM/J
rs6239446					SNP	G	G	A	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:108514664 () rs orientation: forward

Symbol	Name	Function Class
Itpr1	inositol 1,4,5-trisphosphate receptor 1	Intron
Rr636130	regulatory region 636130	291 bp distal
Rr636131	regulatory region 636131	532 bp proximal