rs6239373 SNP Detail

Summary

• ID
  rs6239373
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:17627801 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCATTTCCCT GATGTCTGAA
  GATGTCGACC ATGTGTCCAC CTGCTGTGAT GGACAGCCCA CAGGCTGTGG AGCCTAGCTT
  GTGGTCTCGG CTTGCACCTC CCCGATGTGT AAGGATGTTG ATCATTTGTT CACTTGCAAA
  CACAAAGGCA ATTTTTTGTT TTGTATATAT TGTCTTTAGA AAAATGCACA GTCAAATCTT
  R
  TACCTGTAAT TTTTAATTGT ATAAAAATAT ATGTAATACA CAATTGACTA AAAAAAAATC
  AACATTTTTA CTACTGCATT ACATATCCAT ACATACAATA TCTTTATGTA TTTTTATAAA
  AAGAGGCTTG TATTAATCCT TATAGATAAA AACTCTTTCA AAACAACAAC CACAAAAATA
  TACATTAGTG GAAACATTAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J
ss8645117	WI_WGS_6_17496509	WI	MOUSE	f	SNP			G	A
ss133019225	ENSMUSSNP5737218	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G			G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J
rs6239373					SNP	A	G	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:17627801 () rs orientation: forward

Symbol	Name	Function Class
Rr626820	regulatory region 626820	1247 bp proximal