rs6239286 SNP Detail

Summary

• ID
  rs6239286
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:40593751 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGTAAAAGG GTAACTATAA
  GAATTTTCCT GAATCTGTAA GCTGCTCAAA TAGATTAGTC AAGCGCAAGG AGAGAGCTAT
  GGAAACCTCA TTTTGCAGGC AGTGGACAAG TAAAAACAAG CTGGGTCTCC TGACTGCCAT
  CTTAAAGCGC AGGGCAGTAA AGAGGAGCAG TCTTGGGGAG TGATCCTCAA CATGTAGGGT
  Y
  TGAGCTTCAA AATTTCTGGA TTAGGGTTCA CTGGCTTTCA TAGACTCTGC TGATGTTCAC
  TGGATTAGGT TGATGCTGTT GATGTCCACT GCTTGCTTGC TTCTGGGAAG AAGTCTCCAT
  ACCTTTTGAG GTCACAGGCA TTTCTTTGGT GATTTTTTTC CTAGACACAG AGTGATATTA
  TGTGCATCAT TTAGGCACTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8645030	WI_WGS_3_40427460	WI	MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6239286					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:40593751 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13108	CpG island 13108	998 bp proximal
Intu	inturned planar cell polarity protein	Intron
Rr397649	regulatory region 397649	1008 bp upstream
Rr575837	regulatory region 575837	765 bp proximal
Rr575838	regulatory region 575838	1701 bp proximal
Tssr28955	transcription start site region 28955	1149 bp upstream