rs6239232 SNP Detail

Summary

• ID
  rs6239232
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:99002718 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGGAGGGA AGGTGGGGGG
  GGAGAATGAA AAAAGAAAAA AAAAAAAACA AACCAAGTGA GACATGCTGC AGAAAATGCC
  GTTGACATTA TTATCCGACA TTATCATAGC TCAGCTATGA TGTCATCAAT TTTCATATAA
  GCAACCCAAA GCTCAAAAGT TTCATCTGAT GGGACGTGTT TATTAAAAAG CACAACACAA
  M
  AGCCTACCTT CTTTCCATTA CTTGGGTTAG ATTACTGACA AGGCCATGTT TCCTATTCCT
  TTAAATGGTC AACTTTCTGT TCCACAAGCT GCAGGCAGAT TTGGGGAGAA AAGGTAATTC
  TTTAGGCGAA TTGGCAAACA GAAAGTCCAC TCCTAGCATT CTGTAAGGAG TCCTTAAGGT
  TGGAAAACAA GTGTCTTTGA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8644976	WI_WGS_6_99857947	WI	MOUSE	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6239232					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:99002718 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi17779	CpG island 17779			1908 bp proximal
Foxp1	forkhead box P1			Intron
				Noncoding-Transcript-Variant
Rr399785	regulatory region 399785			1019 bp upstream
Rr635322	regulatory region 635322			582 bp distal
Rr635323	regulatory region 635323			228 bp proximal
Rr635324	regulatory region 635324			987 bp proximal
Tssr62263	transcription start site region 62263			542 bp upstream