rs6238852 SNP Detail

Summary

• ID
  rs6238852
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:17627703 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGTCTAAA AACCTCAGTG
  TCTCTGTTGT TTGGTGTTTC TGTCCTTTCT GTGGTGGACA CCTCACAGGC TGTGGAGAAC
  ACCTTGGGAT TTTGCCTTGC ATTTCCCTGA TGTCTGAAGA TGTCGACCAT GTGTCCACCT
  GCTGTGATGG ACAGCCCACA GGCTGTGGAG CCTAGCTTGT GGTCTCGGCT TGCACCTCCC
  M
  GATGTGTAAG GATGTTGATC ATTTGTTCAC TTGCAAACAC AAAGGCAATT TTTTGTTTTG
  TATATATTGT CTTTAGAAAA ATGCACAGTC AAATCTTGTA CCTGTAATTT TTAATTGTAT
  AAAAATATAT GTAATACACA ATTGACTAAA AAAAAATCAA CATTTTTACT ACTGCATTAC
  ATATCCATAC ATACAATATC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J
ss8644592	WI_WGS_6_17496411	WI	MOUSE	f	SNP			C	A
ss133019222	ENSMUSSNP1404926	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C			C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J
rs6238852					SNP	A	C	C	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:17627703 () rs orientation: forward

Symbol	Name	Function Class
Rr626820	regulatory region 626820	1345 bp proximal