rs6238791 SNP Detail

Summary

• ID
  rs6238791
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:99002668 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTTGACAC TGGGTTGTTT
  TCTATTGTTT GCCATAAGAT CTCTCCCTTC CAGGGAGGGA AGGTGGGGGG GGAGAATGAA
  AAAAGAAAAA AAAAAAAACA AACCAAGTGA GACATGCTGC AGAAAATGCC GTTGACATTA
  TTATCCGACA TTATCATAGC TCAGCTATGA TGTCATCAAT TTTCATATAA GCAACCCAAA
  R
  CTCAAAAGTT TCATCTGATG GGACGTGTTT ATTAAAAAGC ACAACACAAC AGCCTACCTT
  CTTTCCATTA CTTGGGTTAG ATTACTGACA AGGCCATGTT TCCTATTCCT TTAAATGGTC
  AACTTTCTGT TCCACAAGCT GCAGGCAGAT TTGGGGAGAA AAGGTAATTC TTTAGGCGAA
  TTGGCAAACA GAAAGTCCAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8644531	WI_WGS_6_99857897	WI	MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6238791					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:99002668 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi17779	CpG island 17779			1958 bp proximal
Foxp1	forkhead box P1			Intron
				Noncoding-Transcript-Variant
Rr399785	regulatory region 399785			1069 bp upstream
Rr635322	regulatory region 635322			532 bp distal
Rr635323	regulatory region 635323			278 bp proximal
Rr635324	regulatory region 635324			1037 bp proximal
Tssr62263	transcription start site region 62263			492 bp upstream