rs6238664 SNP Detail

Summary

• ID
  rs6238664
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:40593608 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTAAAAGGT TCAGAGAGCC
  TCCAGATCTA TGAGTACATG GAGGGACTTG GAGAGAGACC ACTGACAAAA GCCACTGAGA
  CACCATCCCT TCTCCCATAC CTCCCCTGTG AATCTTTTGG TCTATATTCT TTGTAATGAT
  GTACAGTAAA AGGGTAACTA TAAGAATTTT CCTGAATCTG TAAGCTGCTC AAATAGATTA
  R
  TCAAGCGCAA GGAGAGAGCT ATGGAAACCT CATTTTGCAG GCAGTGGACA AGTAAAAACA
  AGCTGGGTCT CCTGACTGCC ATCTTAAAGC GCAGGGCAGT AAAGAGGAGC AGTCTTGGGG
  AGTGATCCTC AACATGTAGG GTTTGAGCTT CAAAATTTCT GGATTAGGGT TCACTGGCTT
  TCATAGACTC TGCTGATGTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8644404	WI_WGS_3_40427317	WI	MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6238664					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:40593608 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13108	CpG island 13108	1141 bp proximal
Intu	inturned planar cell polarity protein	Intron
Rr397649	regulatory region 397649	1151 bp upstream
Rr575837	regulatory region 575837	908 bp proximal
Rr575838	regulatory region 575838	1844 bp proximal
Tssr28955	transcription start site region 28955	1292 bp upstream