rs6237342 SNP Detail

Summary

• ID
  rs6237342
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:17627434 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATGGTGTTT ATATAGCCAT
  TTATTCCTTT GTTTTGCTAA TTGGATATAC CCGATTTGTC AATTCATTTA TCACTTGAAG
  GCCATTTGTA TTTTTTTCAA GTTCTGACTA CTATTAATAA TTCTTCTATG AATATTCATG
  GTAAATATTC CTGTGTAAGT TTCATAATTT TTTGGTAGAA GTATTAGAAT AGATTCTTGA
  K
  TCCTGATTTA AGCAGGAAAG ACCTGCCAGA TGCTTTAAAG AGCCTGCACT GTTTTGACGT
  CCCCACAAGC AGTCTAAAAA CCTCAGTGTC TCTGTTGTTT GGTGTTTCTG TCCTTTCTGT
  GGTGGACACC TCACAGGCTG TGGAGAACAC CTTGGGATTT TGCCTTGCAT TTCCCTGATG
  TCTGAAGATG TCGACCATGT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J
ss8643076	WI_WGS_6_17496142	WI	MOUSE	f	SNP			G	T
ss133019219	ENSMUSSNP2660509	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G			G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J
rs6237342					SNP	T	G	G	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:17627434 () rs orientation: forward

Symbol	Name	Function Class
Rr626820	regulatory region 626820	1614 bp proximal