rs6236817 SNP Detail

Summary

• ID
  rs6236817
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:17627363 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAATATAC TTAAAAACAC
  TGAATTTTTT TTTTAAATTA GTTTCCCATT GGCTGTTTGG TTTGCAGTGC TTATGGTGTT
  TATATAGCCA TTTATTCCTT TGTTTTGCTA ATTGGATATA CCCGATTTGT CAATTCATTT
  ATCACTTGAA GGCCATTTGT ATTTTTTTCA AGTTCTGACT ACTATTAATA ATTCTTCTAT
  R
  AATATTCATG GTAAATATTC CTGTGTAAGT TTCATAATTT TTTGGTAGAA GTATTAGAAT
  AGATTCTTGA GTCCTGATTT AAGCAGGAAA GACCTGCCAG ATGCTTTAAA GAGCCTGCAC
  TGTTTTGACG TCCCCACAAG CAGTCTAAAA ACCTCAGTGT CTCTGTTGTT TGGTGTTTCT
  GTCCTTTCTG TGGTGGACAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J
ss8642551	WI_WGS_6_17496071	WI	MOUSE	f	SNP			G	A
ss133019210	ENSMUSSNP574180	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G			G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J
rs6236817					SNP	A	G	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:17627363 () rs orientation: forward

Symbol	Name	Function Class
Rr626820	regulatory region 626820	1685 bp proximal