rs6235955 SNP Detail

Summary

• ID
  rs6235955
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:114872705 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGAGTGAC AGATGGTCGT
  GAGCCATCTG GCCTGGGTGC TGTGAACAGA ACTCTGGGCC TCTGCAAGGG TGGTTAGTGA
  TGTAACCACT GGCCCACTTC TACAGAATCA GAGATCTCAA AAACTTTTCA TTCACAAACC
  CTTTTGGCCC AAGAACCATC TCCTAATGAA TAAAGAAATC AATCACTGGG GGAGTAGGTG
  R
  GACTTCCAGG TTGGATGGGA GAGGAAGAGG AGAGAGTTAG GGGCCTTGGG ATGGGGATAG
  CAAAAGGGCA AAATGTAGCT ACTGTTGTCT CCTGGCTTCA TAGAGAGTCT GCATGATGGA
  GTCCACACAC TATATGCTCA GAACCAAGGC TCGGTAAACT CACGTGGTGA AACACAGGTA
  AGTGTGGTCA GACAAACCTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C3H/HeJ	C57BL/6J
ss8641687	WI_WGS_6_115676821	WI	MOUSE	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	C3H/HeJ	C57BL/6J
rs6235955					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:114872705 () rs orientation: forward

Symbol	Name	Function Class
Rr368149	regulatory region 368149	1802 bp downstream
Rr636859	regulatory region 636859	674 bp distal
Rr636860	regulatory region 636860	755 bp distal
Rr636861	regulatory region 636861	658 bp distal
Rr636862	regulatory region 636862	636 bp proximal
Vgll4	vestigial like family member 4	Intron