rs6235281 SNP Detail

Summary

• ID
  rs6235281
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:129821269 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAGAG AGAGAAAGCA ATTGACATAT
  Y
  AATTAGATGA AAGATATTTT CAAAT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	C3H/HeJ	C57BL/6J	CZECHII/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss8641013	WI_WGS_4_127432712	WI	MOUSE	f	SNP				T	C
ss37717979	NES09179334	PERLEGEN	MM_PANEL2	f	SNP		C	C			C	T		T	C	C		C
ss147454555	ENSMUSSNP5751808	ENSEMBL	ENSEMBL_Sanger	f	SNP	C					C
ss321316116	CHEV_4_129604720	CHEVERUD	SCREENING_POP	f	SNP								C				T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	C3H/HeJ	C57BL/6J	CZECHII/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs6235281					SNP	C	C	C	T	C	C	T	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37717979	NES09179334	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:129821269 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14911	CpG island 14911	1031 bp proximal
Rr600385	regulatory region 600385	73 bp distal
Rr600386	regulatory region 600386	659 bp distal
Rr600387	regulatory region 600387	763 bp proximal
Rr600388	regulatory region 600388	1142 bp proximal
Spocd1	SPOC domain containing 1	1773 bp upstream
Tssr39208	transcription start site region 39208	1291 bp upstream
Tssr39209	transcription start site region 39209	1313 bp upstream