rs6234792 SNP Detail

Summary

• ID
  rs6234792
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:95946518 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAATC TGCCTGCAAA TTAAGAAATG
  Y
  CAGTCTCAAG AACAGAATTC TTTGT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J	LG/J	SM/J
ss8640524	WI_WGS_3_96324984	WI	MOUSE	f	SNP				C	T
ss45426280	mCV22909998	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	C		C
ss135513593	ENSMUSSNP1012081	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T			C
ss320841385	CHEV_3_95843129	CHEVERUD	SCREENING_POP	f	SNP							C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J	LG/J	SM/J
rs6234792					SNP	T	T	T	C	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95946518 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr581123	regulatory region 581123			1462 bp proximal
Vps45	vacuolar protein sorting 45			Intron
				mRNA-UTR