rs6234176 SNP Detail

Summary

• ID
  rs6234176
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:95946379 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGGTTCTC ATCTGAAACA
  GTCTTAGATA TATGGTTAAG TGAGAAAACA GATGCAGCTC TCTGTAGAGT ATGGTACCAC
  TTGAATTAAA AAAGAGATAT ACCCAGCATG TGGGAGGCAG AAGCAAGTGG ATCTTTGTGA
  GTTCAAGGCC GGCTCGGCCT ATATAGCAAG TTCCAGGCCA GCCATGGTTA TCTAGTGAGA
  R
  CCTGTCTCAA ACATACAAGA GATGTGCACA CATGGCTTGG GAGAACCTGT AAGGGTACAC
  GGCATTGTTA GCAGACTCGG GTTTTACTGT ACACCTTGTT CAACCTATAT TTACAATCTG
  CCTGCAAATT AAGAAATGCC AGTCTCAAGA ACAGAATTCT TTGTAAAGAT TTGGGAGCCA
  TGGACAATAT TAAAATGATG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8639905	WI_WGS_3_96324845	WI	MOUSE	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6234176					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95946379 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr581123	regulatory region 581123			1601 bp proximal
Vps45	vacuolar protein sorting 45			Intron
				mRNA-UTR