rs6233763 SNP Detail

Summary

• ID
  rs6233763
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:129821022 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGCTGAAATA AATAAGCTTT
  TAAGACAAAC ATTATCCTTG AGTTCCATAC TTTAAAAAAA AAAGTATTTT TCGAATGCTT
  CTTAAAAAGT GGTTTTGAAA TATCTAAAGC AGGAATTTAG ACACATAAAT CCACAATAGT
  AATGTGAGAT TTAAAAATAC CCCACGGACA TGGGGTATTT TTAACACATG ACTGATATTT
  W
  AAAATACCCA CTGAGGGCCT GGAGATGTGG CTCAATGGGC AGAGTGGTTA CCCACCATGC
  CCGAAACCCT AGCTCCATCC CTAGCATGGC ATAAACCACT GTGGTAGTCC ACACCTGTGA
  TCCCAGCACC CTGGAAGTGA GAAGATTAAG GCTCCCATTG GTTACTTACT GATTTCTAGG
  CCAGTCTGAG ATTCATGAGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8639487	WI_WGS_4_127432465	WI	MOUSE	f	SNP							A		T
ss37717980	NES09179372	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A		A		A	A	A	A	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6233763					SNP	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37717980	NES09179372	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:129821022 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14911	CpG island 14911	1278 bp proximal
Rr600385	regulatory region 600385	within coordinates
Rr600386	regulatory region 600386	412 bp distal
Rr600387	regulatory region 600387	1010 bp proximal
Rr600388	regulatory region 600388	1389 bp proximal
Tssr39208	transcription start site region 39208	1538 bp upstream
Tssr39209	transcription start site region 39209	1560 bp upstream