rs6233720 SNP Detail

Summary

• ID
  rs6233720
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:95946333 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTCAAAGA ATAAACAAAT
  TATTAAGAAA ATAAAATCAT AAGACTGAAG GTTCTCATCT GAAACAGTCT TAGATATATG
  GTTAAGTGAG AAAACAGATG CAGCTCTCTG TAGAGTATGG TACCACTTGA ATTAAAAAAG
  AGATATACCC AGCATGTGGG AGGCAGAAGC AAGTGGATCT TTGTGAGTTC AAGGCCGGCT
  Y
  GGCCTATATA GCAAGTTCCA GGCCAGCCAT GGTTATCTAG TGAGAACCTG TCTCAAACAT
  ACAAGAGATG TGCACACATG GCTTGGGAGA ACCTGTAAGG GTACACGGCA TTGTTAGCAG
  ACTCGGGTTT TACTGTACAC CTTGTTCAAC CTATATTTAC AATCTGCCTG CAAATTAAGA
  AATGCCAGTC TCAAGAACAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8639443	WI_WGS_3_96324799	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6233720					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95946333 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr581123	regulatory region 581123			1647 bp proximal
Vps45	vacuolar protein sorting 45			Intron
				mRNA-UTR