rs6232785 SNP Detail

Summary

• ID
  rs6232785
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:66087139 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACTTCCCGG GCCCTCAAAC
  CCTAAGGGAC GCGGCGTGCA GCACGAGGGG CGTGGCCCGA TCTCCATTGG TTGTCGGCGT
  GAGGGGGCGG AGCTTAGTTG TAGGACTAGG AAGGAGGGGG CCACCGGAGC AGGCGAGGAG
  GGAACCCCGA GGGAGGACCG CGAGGGCGAC TGGGGCTGGA ATCCGCTGAG CATTGAGTGC
  Y
  GCCGAGTTGT GGGGCTAGAG GAGGGAGGTC CAGCCTGGAA ACGGCGCGAG GAGGAGGGAT
  TGGGTGGAGC AAGAGATATG AGATTAAAGA ATAAAGATGA TGAAGCAGCA AATAGGAGGG
  AGAGCCATGC CGCTTTTCAT CCCTGCAAAC AAAGGCCGAC TCCATTTTCT CAGCATTTTT
  TGTGGAAGCC GATTTGCGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8638506	WI_WGS_2_67013284	WI	MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6232785					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:66087139 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11703	CpG island 11703	within coordinates
Rr397014	regulatory region 397014	5 bp downstream
Rr558173	regulatory region 558173	214 bp distal
Rr558174	regulatory region 558174	379 bp distal
Rr558175	regulatory region 558175	within coordinates
Rr558176	regulatory region 558176	260 bp proximal
Tssr24377	transcription start site region 24377	150 bp upstream
Ttc21b	tetratricopeptide repeat domain 21B	mRNA-UTR