rs6231097 SNP Detail

Summary

• ID
  rs6231097
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:89011775 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACTCCTCC CTGTTGGAGT
  GGCCCCTGTG GGCTGAAGCT CTTTGCTTGC ATACAGACCT GGGGAGGCTC TGAGCTGTAC
  ATGGTGATCC ACAGCAGAGC AGAGGAGGTT TCCAAGTTGG CCTGTCATTC TGTCTCTGAG
  AGTGACCCAT GGCCTTTGCC CTGACTCCAA CCTCTGACCT TAGCAGTGTT TTCCTCTGGT
  Y
  CCTTCTCCGA CACTTTTTAG GCACATGTAA GAAGCCCAGG ACTCTGGGGA CAGGTTGGGG
  TGAGGCGAGG CAGGGGTCAG AAACAGAGCC AGCACTGAGA TCTTTGCTGA GGCTCTTTCT
  GTCTCATGTG GGGCCATCTA GGTGCTTTGA GCTTTGGGCT CATCCTTAAG GGACCACTGG
  CCTCCCCGGA GCTGCTTTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8636815	WI_WGS_6_89905932	WI	MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6231097					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:89011775 () rs orientation: forward

Symbol	Name	Function Class
Gm66902	predicted gene, 66902	within coordinates
Rr1306	regulatory region 1306	within coordinates
Rr634069	regulatory region 634069	682 bp distal
Rr634070	regulatory region 634070	251 bp proximal