rs6230449 SNP Detail

Summary

• ID
  rs6230449
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:89011648 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCCAGCTAT GTCCTGGGCT
  CCTCGGCAGC CTGCATTGCC TCCGTGTTCC CTGCTGGGTG TGTCACCTCC CTATTGGGAG
  GTTGGGATTG GTTCTGGTCC TTTTAATCAA CACTGTCCTG AGAGCCAACA CTCCTCCCTG
  TTGGAGTGGC CCCTGTGGGC TGAAGCTCTT TGCTTGCATA CAGACCTGGG GAGGCTCTGA
  R
  CTGTACATGG TGATCCACAG CAGAGCAGAG GAGGTTTCCA AGTTGGCCTG TCATTCTGTC
  TCTGAGAGTG ACCCATGGCC TTTGCCCTGA CTCCAACCTC TGACCTTAGC AGTGTTTTCC
  TCTGGTTCCT TCTCCGACAC TTTTTAGGCA CATGTAAGAA GCCCAGGACT CTGGGGACAG
  GTTGGGGTGA GGCGAGGCAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8636166	WI_WGS_6_89905805	WI	MOUSE	f	SNP							G		A
ss51760882	NES14794796	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G		G		G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6230449					SNP	G	G	G	G	G	G	G	G	A	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51760882	NES14794796	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:89011648 () rs orientation: forward

Symbol	Name	Function Class
Gm66902	predicted gene, 66902	within coordinates
Rr1306	regulatory region 1306	10 bp proximal
Rr634069	regulatory region 634069	555 bp distal
Rr634070	regulatory region 634070	378 bp proximal