rs6230254 SNP Detail

Summary

• ID
  rs6230254
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:95906953 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTCTTGGTA GGTGGTGTCT
  GTCTGTAGGG GGGCAGTCTC AGGCTGGTCT TGGTAGGTGG TGTCTGTAGG GGGGCAGTCT
  CAGGCTGGTC TTGGTAGGTG GTGTCTGTAG GGGGGCAGTC TCAGGCTGGT CTCGGTAGGT
  GGTGTCTGTC TGTAGGGGGG CAGTCTGAAC CTGATCTGGG AGAAAGGCTT TGCCAACTTT
  R
  CAAAGGTCTG ATACCATGGT CCTTAACATG GCTGGCTCAT GTCAGAACTT CACTTGTTTA
  GGATATCAAG AGAAGTCAGG ACCTAAGTGA TGGTACCGCG TGCATCACAT GGCTTTCTGA
  ATCCCTCTTA TCTCTGACAA CACATTTCTC ATATACTACC TCAACAGAGC CCATCAAACA
  CTGAAGCCTG TGCTGTCAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	CZECHII/EiJ	PWD/PhJ
ss8635971	WI_WGS_3_96285394	WI	MOUSE	f	SNP		A	G
ss46778651	NES10731936	PERLEGEN	MM_PANEL2	f	SNP	A			G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	CZECHII/EiJ	PWD/PhJ
rs6230254					SNP	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46778651	NES10731936	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95906953 () rs orientation: forward

Symbol	Name	Function Class
Rr581117	regulatory region 581117	1821 bp distal
Rr581118	regulatory region 581118	within coordinates
Rr581119	regulatory region 581119	1502 bp proximal
Vps45	vacuolar protein sorting 45	191 bp downstream