rs6230144 SNP Detail

Summary

• ID
  rs6230144
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:95906885 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         Aaaaaaaaaa
  gaaagaaaaa agaaaagaaa agaCAGGGCC AGATGGGCTG TCTGTACTCT GATGGGCAAC
  CTGGGGCCTC TGTGCACTTA TGTACAGCCC AGGGGGGGGA AGTTAGTTGG TCTTGGTAGG
  TGGTGTCTGT CTGTAGGGGG GCAGTCTCAG GCTGGTCTNG GTAGGTGGTG TCTGTAGGGG
  GGCAGTCTCA GGCTGGTCTT GGTAGGTGGT GTCTGTAGGG GGGCAGTCTC AGGCTGGTCT
  Y
  GGTAGGTGGT GTCTGTCTGT AGGGGGGCAG TCTGAACCTG ATCTGGGAGA AAGGCTTTGC
  CAACTTTNCA AAGGTCTGAT ACCATGGTCC TTAACATGGC TGGCTCATGT CAGAACTTCA
  CTTGTTTAGG ATATCAAGAG AAGTCAGGAC CTAAGTGATG GTACCGCGTG CATCACATGG
  CTTTCTGAAT CCCTCTTATC TCTGACAACA CATTTCTCAT ATACTACCTC AACAGAGCCC
  ATCAAACACT                                                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8635861	WI_WGS_3_96285326	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6230144					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95906885 () rs orientation: forward

Symbol	Name	Function Class
Rr581117	regulatory region 581117	1753 bp distal
Rr581118	regulatory region 581118	within coordinates
Rr581119	regulatory region 581119	1570 bp proximal
Vps45	vacuolar protein sorting 45	259 bp downstream