rs6229592 SNP Detail

Summary

• ID
  rs6229592
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:95906803 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         gagttngagg
  ccactactan anagtgagtt ntaggacagc cagggctata tagagaaaac ttgtcttgaa
  aaaccaaaAG aaaaaaaaaa aagaaagaaa aaagaaaaga aaaGACAGGG CCAGATGGGC
  TGTCTGTACT CTGATGGGCA ACCTGGGGCC TCTGTGCACT TATGTACAGC CCAGGGGGGG
  GAAGTTAGTT GGTCTTGGTA GGTGGTGTCT GTCTGTAGGG GGGCAGTCTC AGGCTGGTCT
  Y
  GGTAGGTGGT GTCTGTAGGG GGGCAGTCTC AGGCTGGTCT TGGTAGGTGG TGTCTGTAGG
  GGGGCAGTCT CAGGCTGGTC TNGGTAGGTG GTGTCTGTCT GTAGGGGGGC AGTCTGAACC
  TGATCTGGGA GAAAGGCTTT GCCAACTTTN CAAAGGTCTG ATACCATGGT CCTTAACATG
  GCTGGCTCAT GTCAGAACTT CACTTGTTTA GGATATCAAG AGAAGTCAGG ACCTAAGTGA
  TGGTACCGCG                                                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8635308	WI_WGS_3_96285244	WI	MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6229592					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95906803 () rs orientation: forward

Symbol	Name	Function Class
Rr581117	regulatory region 581117	1671 bp distal
Rr581118	regulatory region 581118	within coordinates
Rr581119	regulatory region 581119	1652 bp proximal
Vps45	vacuolar protein sorting 45	341 bp downstream