rs6228407 SNP Detail

Summary

• ID
  rs6228407
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:95906583 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGAGGTAAG GGGACAGGGG
  GCTGTGTCCC CCGAGTCTTG GTCCTGGAAC CCTGACTGGG ACAGAGGAAA GAACAGACAC
  AAATACCGGT CTAGAAAAGC CAGGGCCAAG CCAGGCTGTG GTGGTGCATG TCTTTAATCC
  CACTTGGGAG GCCAAGGCAG GCGGATTTCT GAGTTCGAGG CCACTACTAT AAAGTGAGTT
  Y
  TAGGACAGCC AGGGCTATAT AGAGAAAACT TGTCTTGAAA AACCAAAAGA AAAAAAAAAA
  AGAAAGAAAA AAGAAAAGAA AAGACAGGGC CAGATGGGCT GTCTGTACTC TGATGGGCAA
  CCTGGGGCCT CTGTGCACTT ATGTACAGCC CAGGGGGGGG AAGTTAGTTG GTCTTGGTAG
  GTGGTGTCTG TCTGTAGGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8634118	WI_WGS_3_96285024	WI	MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6228407					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95906583 () rs orientation: forward

Symbol	Name	Function Class
Gm65578	predicted gene, 65578	1941 bp upstream
Rr581117	regulatory region 581117	1451 bp distal
Rr581118	regulatory region 581118	86 bp proximal
Rr581119	regulatory region 581119	1872 bp proximal
Tssr34586	transcription start site region 34586	1938 bp upstream
Vps45	vacuolar protein sorting 45	561 bp downstream