rs6228397 SNP Detail

Summary

• ID
  rs6228397
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:95906572 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGCATGAGG GATGAGGTAA
  GGGGACAGGG GGCTGTGTCC CCCGAGTCTT GGTCCTGGAA CCCTGACTGG GACAGAGGAA
  AGAACAGACA CAAATACCGG TCTAGAAAAG CCAGGGCCAA GCCAGGCTGT GGTGGTGCAT
  GTCTTTAATC CCACTTGGGA GGCCAAGGCA GGCGGATTTC TGAGTTCGAG GCCACTACTA
  Y
  AAAGTGAGTT TTAGGACAGC CAGGGCTATA TAGAGAAAAC TTGTCTTGAA AAACCAAAAG
  AAAAAAAAAA AAGAAAGAAA AAAGAAAAGA AAAGACAGGG CCAGATGGGC TGTCTGTACT
  CTGATGGGCA ACCTGGGGCC TCTGTGCACT TATGTACAGC CCAGGGGGGG GAAGTTAGTT
  GGTCTTGGTA GGTGGTGTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8634108	WI_WGS_3_96285013	WI	MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6228397					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95906572 () rs orientation: forward

Symbol	Name	Function Class
Gm65578	predicted gene, 65578	1930 bp upstream
Rr581117	regulatory region 581117	1440 bp distal
Rr581118	regulatory region 581118	97 bp proximal
Rr581119	regulatory region 581119	1883 bp proximal
Tssr34586	transcription start site region 34586	1927 bp upstream
Vps45	vacuolar protein sorting 45	572 bp downstream