rs6227846 SNP Detail

Summary

• ID
  rs6227846
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr17:25380423 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         GCTTGCTTAC
  TACTGTACTG TGTGGTATGC CCTTGGGAAG TGGCCTCCCA GGGCCTGGCC ATCCTGGGGT
  AGCCCTAGGA TGGATAGACC CGTGAGCACC AGAGCCAAGG AACTTCACCC CTGAACCCTG
  TGTTGTCAAA GCTGGCCCCA CTGACATCCT TCACTCACCT TCAGGGTCTT CTCCCCTGGG
  AACTTTGTAA AGATAGTTGC AGTGTCTCTG GCACAAGTCT GTTATAAGGT CACACAGGGT
  Y
  TTTCTTTGGA AAGCTGGCAG CTCCTGCCTT TCAGTTGTCC CTCCAAAAGA GCGGCTCTTC
  CTTCCATGAA GAGATGGGCT AAGTATGTTG AATCTGGAAT GAGAAATGAG AGCCCCCTGT
  TCTCTGCCTT GGGCTCAGCA TTCTGGGGAG TCAGGCACTC AGCATGGTGA TAAACAAGTG
  CAGATGGCAC TTTAAACAGT AGNTGCTGTC TGTGTCGGGC AGTGGTGCAG TTCTTGAAGA
  GTACTGCAGC                                                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8633555	WI_WGS_17_24352452	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6227846					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:25380423 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ccdc154	coiled-coil domain containing 154			1012 bp upstream
Clcn7	chloride channel, voltage-sensitive 7			mRNA-UTR
				Noncoding-Transcript-Variant
Mir12188	microRNA 12188			873 bp downstream
Tssr143140	transcription start site region 143140			1750 bp downstream
Tssr143141	transcription start site region 143141			992 bp upstream