rs6227733 SNP Detail

Summary

• ID
  rs6227733
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:84513163 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTAACACCTA CTGCATGCTT
  AGGCAAATCA CTTGCTCCAT GTCTGTTTCT CCATCAGTGT GTGTATCTCT GTGATGTAAT
  TTTATTAAGG CTTAGATGAA ATACCACAAG AGGGAACACA CTTTCTACCA GCATTTAAGT
  GATGAATACA TACAAACCTT GAAACATGTA TAAGTCCATA ATCTAAATCG ACGCAGCAGG
  Y
  GTCCCTGGAA CACGCCACCT CCTCAGCTAT CATCCCACCC TAACCACCCA CACAACCCAG
  ACGTGGCCAG CAGGCTGGGT CTTCCCGGAT GCCCAACTCT ACTAGCTGAC CTCTTGGCAT
  CACAGATGGA TTATTCCTGA CCAACATTTC CAGTCATTCC AAAAATTCTT GGAGTATGAG
  TTAAGGCTGG GTGTGTTTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8633442	WI_WGS_16_85341306	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6227733					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:84513163 () rs orientation: forward

Symbol	Name	Function Class
Mir155hg	Mir155 host gene (non-protein coding)	1030 bp downstream
Mrpl39	mitochondrial ribosomal protein L39	1905 bp downstream
Rr518522	regulatory region 518522	1929 bp distal
Rr518523	regulatory region 518523	80 bp distal
Tssr139174	transcription start site region 139174	1287 bp downstream
Tssr139175	transcription start site region 139175	1188 bp downstream
Tssr139176	transcription start site region 139176	655 bp downstream