rs6227648 SNP Detail

Summary

• ID
  rs6227648
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:170207341 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         TGATGGGACA
  GATAGTGGGA CGGATGGTGG GATGGATGGT GGGACAGATG GTGGAGGCCT TGNTCTTCGT
  TAATAGAGAA TTATGCAATG GTTTCTTTGC AGCTCTNGCC CTGTGACTTT AGTTTTCTTG
  TGCCTGTTTA AGTTCCTAGA TATTGAAAGT CACGGGGACC CAAAGTTGTC TGTCCACATT
  CTTTCCATTC CACAGAGATT AAGAGCTTGG CAAATTCACC AAGGAAGCTA TGTAGCCAGA
  Y
  ACATCCCCTG TAAGAATATC AGGCAGCATG GCTGNGTTCC AATGACCTAG GTCATTCATA
  TCTCATATGT CACTTTAGGA NTTCTTTGTG TCAGTCCACG GCTTTGGCCT TTTTTGTTTT
  Gtggactgaa ttntactgtg tagcacagtg tagctttgac ataggaatcc actccaggtt
  cttaagtgct aggattacaa gtgtaagcta ctatgcctgg cTATAAGNTA NACTATTTAA
  TATTTAATCC                                                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8633357	WI_WGS_2_171376986	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6227648					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:170207341 () rs orientation: forward

Symbol	Name	Function Class
Bcas1	brain enriched myelin associated protein 1	Intron
Bcas1os2	brain enriched myelin associated protein 1, opposite strand 2	within coordinates
Rr571426	regulatory region 571426	within coordinates