rs6226557 SNP Detail

Summary

• ID
  rs6226557
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:170207153 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGACACCG TCTTGGGCTA
  ATACCTGCTA ATACGTCTTG GTTCCAGCTG CAAGGGCTTG GCTGCCTTTC TCTTTATCTG
  CACATTGGTT AGACTCTTGA ATATGAAAAT TGGGGTGCCA GAAGAATGGA GAGACGGATG
  ATGGGACAGA TAGTGGGACG GATGGTGGGA TGGATGGTGG GACAGATGGT GGAGGCCTTG
  Y
  TCTTCGTTAA TAGAGAATTA TGCAATGGTT TCTTTGCAGC TCTCGCCCTG TGACTTTAGT
  TTTCTTGTGC CTGTTTAAGT TCCTAGATAT TGAAAGTCAC GGGGACCCAA AGTTGTCTGT
  CCACATTCTT TCCATTCCAC AGAGATTAAG AGCTTGGCAA ATTCACCAAG GAAGCTATGT
  AGCCAGACAC ATCCCCTGTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8632265	WI_WGS_2_171376798	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6226557					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:170207153 () rs orientation: forward

Symbol	Name	Function Class
Bcas1	brain enriched myelin associated protein 1	Intron
Bcas1os2	brain enriched myelin associated protein 1, opposite strand 2	within coordinates
Rr571426	regulatory region 571426	18 bp proximal