rs6226372 SNP Detail

Summary

• ID
  rs6226372
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr15:98778139 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         aaaattattt
  ttgttgctac ttcatagcta tgatttcgct atcgtcgtga accgcaatgt acatattttt
  ggaggtacag ggtTGCAAAT GGGGTCTCAA CTCAGAGACT GAGAACCTCT TGATCTATAC
  TATCCTGGTC TAGAACGGCA CAAACGCCAC GCTCTAGACA CTAGAATGGG ACTCCCAGAG
  CTGATTAGTG GACCCTATAA ACAAACCATC CTCTTTGCAA CAAAGAAATC TCAAATTATG
  R
  AGTTTGAGAG GGCACCCAGT CTATCTAGGT TCCATCCCCT TCACACTAAA GAAAATTACT
  CATgccaggt ggtagtggcg cacgccttta atcctagtat tccagaggca gaggcaggag
  gatctctgaa ttcgaagcca atctggtcta caaagctagt tctagcagcc aaggatacac
  aaagaaacct tgtctcaaaa caaaaaacaa aGTGGTGGGG GGTGTTGGGG GGGGGATGCA
  ACTACTTACT                                                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8632079	WI_WGS_15_99792823	WI	MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6226372					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:98778139 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rhebl1	Ras homolog enriched in brain like 1			Intron
				Noncoding-Transcript-Variant
Rr404611	regulatory region 404611			1037 bp upstream
Rr509205	regulatory region 509205			1008 bp proximal
Tssr136315	transcription start site region 136315			962 bp downstream
Tssr136316	transcription start site region 136316			997 bp downstream
Tssr136317	transcription start site region 136317			1103 bp downstream
Tssr136318	transcription start site region 136318			1130 bp downstream