rs6225989 SNP Detail

Summary

• ID
  rs6225989
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:126418016 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTGTGGTTT AGTTCTTATA
  TATTCTAGGT CAGTTTTGAA ATCCAATTTA TCAATGTGGT GTTTAGAGAT TATAATTTAG
  AACCTTGCCA TGTATGATGA GGAACATGTC CCTTTTACAT TTTTCTAAGT CTGTTAGAGG
  AGCAAAACTG GGGAAACCCA TTCTTTAGAG ACATTGGGAG ATGTTAGCTG GGCTGGTTAT
  M
  TTAGCTCTTC CCCTTTCCTT ATTTTTCTTT TTACTCAATG AGCCCATGCA TTTCAAGAAA
  TGTGGCCCTA GTAGAGTATG TTCTCTTGTC GGTTTTCTGG TGTCAATCAT GAAGGTGCCA
  GTTTTAATGC CCAACCTTCT GGGCTGCAGC TGGTCCTGCA CAGGAAGCCA CTTTGGCATT
  AATATTTCAG GTTTCCTCTC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8631696	WI_WGS_3_127106719	WI	MOUSE	f	SNP							C		A
ss46955851	NES10677195	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C		A		C	C	C	C	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6225989					SNP	C	C	C	C	C	C	C	A	A	C	C	C	C	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46955851	NES10677195	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:126418016 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Camk2d	calcium/calmodulin-dependent protein kinase II, delta			Intron
				Noncoding-Transcript-Variant
Gm43010	predicted gene 43010			1513 bp upstream
Gm64675	predicted gene, 64675			852 bp upstream
Rr584659	regulatory region 584659			834 bp proximal