rs6225448 SNP Detail

Summary

• ID
  rs6225448
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:126417913 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTAAAGGCA GAGTTTGCAG
  GTTACGTTCC TCTTTTTATC ATCTTCAGCA GATTGTGGGT GATTGCAGTT TTCTCTAATA
  GCCCGATGGT GTTTCATTTT ATAAGTGTGG TTTAGTTCTT ATATATTCTA GGTCAGTTTT
  GAAATCCAAT TTATCAATGT GGTGTTTAGA GATTATAATT TAGAACCTTG CCATGTATGA
  Y
  GAGGAACATG TCCCTTTTAC ATTTTTCTAA GTCTGTTAGA GGAGCAAAAC TGGGGAAACC
  CATTCTTTAG AGACATTGGG AGATGTTAGC TGGGCTGGTT ATCTTAGCTC TTCCCCTTTC
  CTTATTTTTC TTTTTACTCA ATGAGCCCAT GCATTTCAAG AAATGTGGCC CTAGTAGAGT
  ATGTTCTCTT GTCGGTTTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss8631154	WI_WGS_3_127106616	WI	MOUSE	f	SNP								T		C
ss45470343	mCV23466501	ABI	CRAMUS_MOUSE	f	SNP		C	C					T			T
ss46955849	NES10677194	PERLEGEN	MM_PANEL2	f	SNP	C		C	T	C	T	C		C		T	T	T		C	T	T	C		T
ss135837327	ENSMUSSNP2536215	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C								T
ss320946775	CHEV_3_126327182	CHEVERUD	SCREENING_POP	f	SNP														T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs6225448					SNP	C	C	C	T	C	T	C	T	C	C	T	T	T	T	C	T	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46955849	NES10677194	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:126417913 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Camk2d	calcium/calmodulin-dependent protein kinase II, delta			Intron
				Noncoding-Transcript-Variant
Gm43010	predicted gene 43010			1616 bp upstream
Gm64675	predicted gene, 64675			749 bp upstream
Rr584659	regulatory region 584659			937 bp proximal