rs6225014 SNP Detail

Summary

• ID
  rs6225014
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:126417867 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         TTTATTTAGA
  AAATATANNT ATGTCTTGGC TGTTTCTTAT GAAACTGGTG CTCTTTAGTC TTTAAACTGT
  ATAGATTTGC ACATTACACN AGTTCTTGTA AAGGCAGAGT TTGCAGGTTA CGTTCCTCTT
  TTTATCATCT TCAGCAGATT GTGGGTGATT GCAGTTTTCT CTAATAGCCC GATGGTGTTT
  CATTTTATAA GTGTGGTTTA GTTCTTATAT ATTCTAGNTC AGTTTTGAAA TCCAATTTAT
  Y
  AATGTGGTGT TTAGAGATTA TAATTTAGAA CCTTGCCATG TATGANGAGG AACATGTCCC
  TTTTACATTT TTCTAAGTCT GTTAGAGGAG CAAAACTGGG GAAACCCATT CTTTAGAGAC
  ATTGGGAGAT GTTAGCTGGG CTGGTTATNT TAGCTCTTCC CCTTTCCTTA TTTTTCTTTT
  TACTCAATGA GCCCATGCAT TTCAAGAAAT GTGGCCCTAG TAGAGTATGT TCTCTTGTCG
  GTTTTCTGGT                                                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8630720	WI_WGS_3_127106570	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6225014					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:126417867 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Camk2d	calcium/calmodulin-dependent protein kinase II, delta			Intron
				Noncoding-Transcript-Variant
Gm43010	predicted gene 43010			1662 bp upstream
Gm64675	predicted gene, 64675			703 bp upstream
Rr584659	regulatory region 584659			983 bp proximal