rs6224790 SNP Detail

Summary

• ID
  rs6224790
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:12777435 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATCTAACAC ACAGCTATTT
  GTATAAGCTA GAATTTAAAT TAGGCATATT TTATAAGAAG CTTAGCAATT ACTTTTTGTT
  AAGTATGGAA AACCATGATA GAAAGATTGT ACGGGAGGAT GCTGGATGCT GGGATTATAG
  TCCTTGGTTG CAAAATGGCA TTCACTGGTA TTTGTATCCG ATTCAGGGGC TACTGGTGAT
  Y
  CCAGTGTTTG ACAGAAATAA GTCAGATATA AAGTATACCA TATGACTTCA AATACAAATA
  TTACATTTTA CAATTCATCT ATTCTCAAAG ATGAAGGGAA TTTAATTCTA TATTATTCAA
  CTTACCATTC CTGAGGTCAC ACCAGAATGC AGCAAACTTA GAACTTCTTT AACAATAATA
  ATTACATGGC TTTTTGGTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8630494	WI_WGS_4_12267188	WI	MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6224790					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:12777435 () rs orientation: forward

Symbol	Name	Function Class
Rr589102	regulatory region 589102	1216 bp distal