rs6224739 SNP Detail

Summary

• ID
  rs6224739
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:75773489 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

             GGCCTGCTCA TCGCCTAACC CCTCACCGAC AGCTTGATGG AAAGGAGAGG
  W
  TCCATGTGAC TGGGAGTAAG GAAGGATCGT TCTCACCCCG CAGACTAACA           
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8630443	WI_WGS_10_76372777	WI	MOUSE	f	SNP							T		A
ss47906415	NES11927814	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T		A		T	T	T	A	T	T	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6224739					SNP	T	T	T	T	T	T	T	A	A	T	T	T	A	T	T	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47906415	NES11927814	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:75773489 () rs orientation: forward

Symbol	Name	Function Class
Chchd10	coiled-coil-helix-coiled-coil-helix domain containing 10	mRNA-UTR
Gm867	predicted gene 867	68 bp downstream
Rr384937	regulatory region 384937	within coordinates
Rr401998	regulatory region 401998	1610 bp downstream
Rr434185	regulatory region 434185	within coordinates
Tssr94149	transcription start site region 94149	1783 bp downstream
Tssr94150	transcription start site region 94150	1747 bp downstream
Tssr94151	transcription start site region 94151	1396 bp downstream
Tssr94152	transcription start site region 94152	1363 bp downstream
Tssr94153	transcription start site region 94153	1333 bp downstream
Tssr94154	transcription start site region 94154	1322 bp downstream
Tssr94155	transcription start site region 94155	1238 bp downstream
Tssr94156	transcription start site region 94156	481 bp downstream
Tssr94157	transcription start site region 94157	460 bp downstream
Tssr94158	transcription start site region 94158	322 bp downstream
Tssr98154	transcription start site region 98154	733 bp downstream