rs6224421 SNP Detail

Summary

• ID
  rs6224421
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:130006756 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCAGAGCAG TGCGTCTCTG
  TATATAAGCA CTATATATGG AGACTTACAG GTACCAGGCA CTGTGCTGGG CCTGCTGCAG
  GTGAGGATGG TGGTGGATGA GGGTGGTGGT GGTTATGATG ATGGTGATGG TGATGATGAA
  AGAAACTCTG CCTGCCCCTA GGGAACTTCC TGTTGGGTGA GGGAGACATT GGACAGGCAC
  R
  GATAACTCAC CCACCAACTG AAAAGCAGCT GGAGTGGTGC TTGACCAGGG AGGGTGTAAC
  AGGCCTTCCT TTCTGGGTTC ACTGTGTGCT CTTGCCATTC CCTGACCACA TCAGGCTCAG
  GCATAAGTCT GCTTTGTCTG TCTTCTTGTG GGTATAGTGT CCCTCTCTGC TTCTTTGTCT
  GTCTTCTTGT GGGTATAGTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8630124	WI_WGS_4_127621739	WI	MOUSE	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6224421					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:130006756 () rs orientation: forward

Symbol	Name	Function Class
Gm40258	predicted gene, 40258	966 bp upstream
Pef1	penta-EF hand domain containing 1	Intron
Rr600448	regulatory region 600448	306 bp distal