rs6224386 SNP Detail

Summary

• ID
  rs6224386
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:130006733 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTGCTTTC TCCCACATAA
  CTCTGCAGAG CAGTGCGTCT CTGTATATAA GCACTATATA TGGAGACTTA CAGGTACCAG
  GCACTGTGCT GGGCCTGCTG CAGGTGAGGA TGGTGGTGGA TGAGGGTGGT GGTGGTTATG
  ATGATGGTGA TGGTGATGAT GAAAGAAACT CTGCCTGCCC CTAGGGAACT TCCTGTTGGG
  Y
  GAGGGAGACA TTGGACAGGC ACAGATAACT CACCCACCAA CTGAAAAGCA GCTGGAGTGG
  TGCTTGACCA GGGAGGGTGT AACAGGCCTT CCTTTCTGGG TTCACTGTGT GCTCTTGCCA
  TTCCCTGACC ACATCAGGCT CAGGCATAAG TCTGCTTTGT CTGTCTTCTT GTGGGTATAG
  TGTCCCTCTC TGCTTCTTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8630089	WI_WGS_4_127621716	WI	MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6224386					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:130006733 () rs orientation: forward

Symbol	Name	Function Class
Gm40258	predicted gene, 40258	943 bp upstream
Pef1	penta-EF hand domain containing 1	Intron
Rr600448	regulatory region 600448	283 bp distal