rs6223812 SNP Detail

Summary

• ID
  rs6223812
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:130006636 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCCAACCC CCAGCTCATC
  CTCCAAAACC ACATTGGCTA ATTCTCCCAA CAAGGCTCAC AGCACATCTC TCCTCCTTAG
  GAAACCCTTC TGTGGTGCTC TGCTTTCTCC CACATAACTC TGCAGAGCAG TGCGTCTCTG
  TATATAAGCA CTATATATGG AGACTTACAG GTACCAGGCA CTGTGCTGGG CCTGCTGCAG
  R
  TGAGGATGGT GGTGGATGAG GGTGGTGGTG GTTATGATGA TGGTGATGGT GATGATGAAA
  GAAACTCTGC CTGCCCCTAG GGAACTTCCT GTTGGGTGAG GGAGACATTG GACAGGCACA
  GATAACTCAC CCACCAACTG AAAAGCAGCT GGAGTGGTGC TTGACCAGGG AGGGTGTAAC
  AGGCCTTCCT TTCTGGGTTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8629514	WI_WGS_4_127621619	WI	MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6223812					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:130006636 () rs orientation: forward

Symbol	Name	Function Class
Gm40258	predicted gene, 40258	846 bp upstream
Pef1	penta-EF hand domain containing 1	Intron
Rr600448	regulatory region 600448	186 bp distal