rs6223249 SNP Detail

Summary

• ID
  rs6223249
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:12011367 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGGCCAGAA GGCTAGCTGG
  TAAACTCATA CTCCGTCTCA GTACCAGAGC AACATCAAAA CAGCACCGGA AAAATCAGTG
  ATGGTTCTCT GTTAGGTGTC TAAGCCCCGG GGTTGGAGTT TAGTGAACAA CAACATCCCT
  GAGCTACAAA GCTGGGCATG GTAGGGCAGC ATGGTAGTTA CAGCATCTTT TCTGCTCCTG
  Y
  ACCTTGGTGT GGGACAAAAA AATGGGGTCC TGCATCCACT TTTGGCTAGG GCTGCTGGGC
  GAGGCAGACT GGGGAAGTTT GACTGCTCGG ACCCCAGGAA ACTGCCAGGC AGGTATTGGA
  CTGTGAGAAG CCACAGGACC CGCCCCCCCC CCCCCCCCGC TCCGGGGTGG GGAAGGAAGG
  GCGCAGTCTG GGGTCCCCAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8628951	WI_WGS_2_12111273	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6223249					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:12011367 () rs orientation: forward

Symbol	Name	Function Class
Rr551865	regulatory region 551865	1927 bp distal
Rr551866	regulatory region 551866	1052 bp proximal