rs6222876 SNP Detail

Summary

• ID
  rs6222876
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:173636409 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCCTCCAGC CCTGTCCAGT
  CACCTCCTCA TGTTGGTCTT CCTCTCCCTC CTTCCCTTCT GCTCTAGACA GGAAGTTGCA
  AAGATTCTCT AGGCTGAGGT CCTGATGCCC CCCCAACTCC CAGACTCCCC GTAAACACAC
  ACTTGCTGAA AGGACGAGAA ACCTACTGAC GTATCTAGGT GGGTTAGAAG AAGCCCTGCC
  Y
  AGGTAGCCTG CCTGGCCTAG TGCTGGGGGT TTTGCTGAAC CCCTCCTGCC ACTGTTTGGC
  AGACAGTGAC ACTCAGAGGC TGGGTGGCCT GCCACAGTTG TCCACAGTTG CACACTGCCC
  TGCAGGACCT GTCCCAGAGC TGCATGGCAG TTTGCACGTC CTCTGTCCAG GGAACAGCAA
  CGCCAGCATG GTTTCTGTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8628577	WI_WGS_2_175034123	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6222876					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:173636409 () rs orientation: forward

Symbol	Name	Function Class
Gm14371	predicted gene 14371	within coordinates
Gm75809	predicted gene, 75809	within coordinates
Rr572034	regulatory region 572034	1853 bp distal
Rr572035	regulatory region 572035	442 bp proximal